Private: Essential Tips for Organizing Projects with Labels in Jira

   One of the most recurring questions we get speaking with new JIRA users (and even some experienced ones) is how to best organize their JIRA Issues and Projects. While there’s no one way to organize JIRA projects,  there are some parameters to consider. In this article we’ll define what JIRA projects & Jira Issues are , detail some common ways of organizing projects in JIRA and provide some factors to consider as you plan your projects The goal is that by article’s end, you’ll be making more informed decisions on plotting out your instance!

What is a JIRA project? Typically, a project can be defined as a collection of tasks (Jira Issues) that need to be completed to achieve a certain outcome. In Jira, a project can be thought of as a container used to organize and track those tasks, or issues, across the entire team.

   Simple enough, right? Beyond that, a Jira project is highly configurable and can be easily customized to map around organizational structure, workflow, or level of agile maturity, making it the only tool to fit any team’s unique way of working. Your team can use a Jira project to track and resolve bugs, launch a new feature, and more. Your projects can be found in the top navigation in the “Projects” drop down.

So, how do other JIRA users organize their projects?

    There are a few strategies that are commonly taken with respect to organizing projects. Again, there’s no right or wrong way – it’s simply a matter of appropriate fit. 

Boards – A lot of users assume that boards need to correspond to projects 1:1. This isn’t the case! Since boards are filter-based, they can map to multiple projects. Don’t let a boards restrict how you schematize your projects.

Custom fields – Every team has its own unique needs when managing a project, and JIRA acknowledges this diversity through its Custom Fields feature. In JIRA, issues comprise various fields that capture essential data relevant to the issue. While JIRA offers several standard fields, teams often need to capture information unique to their workflow or project. That’s where Custom Fields come into play.

Custom Fields in JIRA are Jira Administrator defined fields that can be added to issues within any JIRA project. These fields provide teams with the flexibility to add and manage information specific to their project or team’s needs. 

If your business is prone to consistent reorganization, this could create quite a bit of headache for you as a JIRA administrator. Merging and updating custom field options can be cumbersome, so consider your organization’s stability before proceeding.

Labels – Labels in JIRA are similar to tags that you can attach to your issues. They provide a flexible way to categorize issues that cut across different projects or components.

Colorful Jira labels.png

   Labels are great for creating cross-project visibility and can be used by teams to quickly filter issues related to a specific term. For instance, you could create a ‘high priority’ label to identify tasks that need immediate attention across various projects.

   Like any other tool, labels can indeed be misused. Any authorized user can add labels to an issue as long as the label field is available on the issue. Consequently, it’s easy to end up with a very large number of labels. The danger here is that the project can end up with numerous capitalization and spelling variations, e.g., login vs. Login, user vs. User, ready_for_UAT vs. ready_for_uat, etc. This can, in turn, render searching via labels inefficient and prone to error. Below, we’ll share some best practices for avoiding this situation.

HOW COLORED LABEL MANAGER FOR JIRA IMPROVES USER EXPERIENCE

   Using Colored Label Manager helps Jira administrators reduce custom field management toil.  Simply create a new label field and delegate administration to each project administrator.  Now they can define their field options with the team.  No more time lost updating custom field options!

   Colored Label Manager helps you visualize and manage your existing Jira labels and all your custom label fields in one place and with at-a-glance quickness to save time and avoid mistakes.  Make your issues more colorful

Use labels as select list field within your project

   Stop flooding your label fields!  Lock down label fields with restricted select lists.  Users are required to choose from existing labels and won’t be tempted to create new ones.  Increase consistency by creating a restricted Select List field to manage key aspects for your team.  

A REPORT FOR EVERY OCCASION

Assess the team’s productivity and investigate potential blockers by looking at how long they’re spending on their work. Colored Label Manager’s three (3) fully customized reports help you gather and organize data from the labels in your instance.  Save a report for one-click viewing, printing or exporting your report data for later use.

   So there you have it! While this isn’t a comprehensive rundown of what considerations you might make in terms of project organization, it should help you get started and stir up some ideas.

   This article is a bit of a starters guide to JIRA projects and how to get going quickly. If you’re interested in diving further into the nitty-gritty of JIRA Software, nothing beats a deep read of our Colored Label manager documentation.rec

Introduction

      Jira link governance is becoming essential as teams scale, because Jira issue links (Work item Links) play a critical role in visualising relationships between work items such as dependencies, blockers, and related tasks. However, as Jira instances grow and teams multiply, the lack of structured control over Jira link types often leads to inconsistent usage and unreliable dependency tracking.

Different projects begin interpreting Jira link types differently. Some rely heavily on generic relationships like “relates to”, while others create custom link types without clear governance. Over time, this results in confusion, poor reporting accuracy, and technical debt that becomes harder and harder to clean up.

Controlling Jira link types per project is no longer just a best practice, it is a necessity for scalable project governance.

What Are Jira Link Types?

   Jira provides several native link types such as:

  • Blocks / Is blocked by

  • Relates to

  • Duplicates / Is duplicated by

  • Clones / Is cloned by

  • Implements / Is implemented by

  • Created / Created by

These Jira issue links are global, meaning they can be used across every project in your Jira instance, whether they make sense for the project or not. 

Common Real-World Misuse of Jira Link Types

Some examples you have likely seen: 

  • “Is blocked by”  should ideally mean that work cannot start until another work item is resolved. However, in many projects it is incorrectly used to indicate soft dependencies or simple sequencing, even when work could proceed in parallel.

  • Relates to is one of the most misused link types. Teams frequently apply it as a generic relationship for everything: similar topics, vague dependencies, or even loosely connected tasks. Over time, this turns “relates to” into a meaningless label with no operational value.

  • Duplicates is supposed to indicate that two work items represent the same problem, but is sometimes used to link similar requests instead of true duplicates, leading to confusion in reporting and prioritisation.

  • Implements is intended to link a work item to the requirement or specification it delivers. However, in many Jira projects it is incorrectly used to link bugs to features for example, linking a defect as “implements” a user story simply because they are related. This misuse makes it harder to understand what functionality was actually implemented versus what was simply fixed.

In mature Jira environments, these inconsistencies create serious problems:

  • Critical blockers are overlooked

  • Dependencies lose operational meaning

  • Reporting becomes unreliable

  • Automation rules trigger incorrectly

This is why structured governance and clear control over Jira link types per project becomes essential as teams scale.

Why Controlling Jira Link Types Per Project Matters

Implementing structured Jira link management enables organisations to:

  • Enforce consistent relationship definitions

  • Prevent incorrect or irrelevant Jira issue links

  • Maintain clear dependency structures

  • Improve cross-project reporting reliability

  • Strengthen Jira project governance

  • Reduce long-term clean up and maintenance efforts

This level of control transforms Jira links from a passive visual feature into an actively governed project management asset.

A Structured and Scalable Approach to Jira Link Management

A robust approach to Jira link governance should include the ability to maintain consistent, meaningful, and controlled relationships across all work items. Advanced Link Manager for Jira brings this structure into practice by enabling teams to : 

  • Define allowed Jira link types per project (e.g., hide “Relates to” in projects where it causes noise).

  • Restrict which work item types can be linked (e.g., “Is Blocked By” accepts Bugs only).

  • Highlight historical unauthorized or incorrect links and fix them in just a few clicks.

  • Maintain structured, readable link displays by sorting and customizing the order of issue links and link types.
  • Add key columns like Due Date, and edit them inline for faster triage.

 
advanced-link-manager-smart-link-rules
Smart link validation enforcing project rules: “Is Blocked By” accepts Bugs only, ensuring clean and controlled dependencies.
 
  • Check dependencies health using the Matrix view to see what’s progressing, what’s blocked and where attention is needed.

jira-matrix-view-dependencies
Advanced Link Manager for Jira Matrix View showing dependency health and blocked relationships at a glance.
  • Visualise and manage dependencies with the graph view quickly identifying blockers, risk chains, and incorrect relationships.
jira-graph-view-dependencies
Advanced Link Manager for Jira Graph View visualising dependency flows and relationships for clearer decision-making.

This structured governance model ensures that Jira issue relationships remain aligned with real workflow logic as projects scale.

By standardising link behaviour across projects, teams finally trust dependencies again, which directly improves planning, reporting, and delivery.

For a deeper technical walkthrough of how these controls are configured and applied, you can explore the Advanced Link Manager solution and implementation guide.

 

Final Thoughts

Jira issue links are essential for understanding relationships between work items, but without structured governance they quickly become unreliable. Controlling Jira link types per project allows organisations to regain structure, clarity, improve reporting accuracy, and maintain scalable Jira environments.

For teams managing large or complex Jira instances, exploring advanced Jira link management solutions such as Advanced Link Manager for Jira can provide the level of governance required for long-term scalability and clarity.

Further Reading & Documentation

 

FAQ

1. Why do Jira link types become inconsistent across teams?

Because link types in Jira Cloud are global and not enforced. Each team develops its own habits over time, leading to inconsistent usage, mixed interpretations, and unreliable dependency data.

2. Can Jira restrict link types per project?

No. Native Jira does not support project-level link type restrictions. All link types are available in every project by default, which is why governance tools are required.

3. Why are Jira issue links difficult to control?

Jira does not provide validation rules or enforcement mechanisms. Teams can link any issue type using any link type, making it easy for incorrect or irrelevant relationships to accumulate.

4. How can I manage Jira link types at scale?

At scale, link management requires structured governance, validation rules, and visibility tools to monitor link consistency across projects. This is where solutions like Advanced Link Manager provide real value.

5. Will Advanced Link Manager detect incorrect links created before installation?

Yes. The app automatically highlights historical unauthorized or incorrect links created before installation, allowing teams to spot legacy issues immediately.

6. Do I need to manually clean existing links before using the app?

No. You can install the app and begin identifying link problems right away. Cleanup can be performed gradually, with clear warnings helping teams correct issues when needed.

7. What happens if a user creates a link that violates project rules?

The link is flagged with a clear warning. Users can fix it in a few clicks by changing the link type, selecting a valid work item, or removing the incorrect relationship.

8. Can I bulk-fix old or incorrect Jira links with Advanced Link Manager?

Yes. The app allows bulk operations to replace, correct, or remove outdated or inconsistent link types  making it efficient to clean years of accumulated link issues.

9. How can I identify incorrect or unauthorised Jira links?

In native Jira, incorrect links are difficult to detect at scale. Advanced governance tools can automatically highlight invalid or unauthorised links, including historical ones, making clean-up and validation more efficient.

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